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Publications

Engineering, applications, and future perspectives of GPCR-based genetically encoded indicators for neuromodulators.

Rohner V, Lamothe-Molina PJ, Patriarchi T.

“There’s plenty of room at the bottom”: deep brain imaging with holographic endo-microscopy

Hana Uhlířová, Miroslav Stibůrek, Tomáš Pikálek, André Gomes, Sergey Turtaev, Petra Kolbábková, Tomáš Čižmár

HBK-15, a multimodal compound, induces procognitive effects through modulating hippocampal LTP and enhancing theta-gamma coupling in mice

Karolina Pytka, Email, Kinga Sałaciak, Klaudia Lustyk, Małgorzata Szafarz, Sara Inteiro-Oliveira , MJ Diogenes, Sara Xapelli,Paulina Schnur, Lucy Morton, Erin Moran, Jacques Ferreira, Shuzo Sakata

Exploiting holographically encoded variance to transmit labelled images through a multimode optical fiber

Liam Collard, Mohammadrahim Kazemzadeh, Linda Piscopo, Massimo De Vittorio, Ferruccio Pisanello

A non-canonical striatopallidal Go pathway that supports motor control

Marie A. Labouesse, Arturo Torres-Herraez, Muhammad O. Chohan, Joseph M. Villarin, Julia Greenwald, Xiaoxiao Sun, Mysarah Zahran, Alice Tang, Sherry Lam, Jeremy Veenstra-VanderWeele, Clay O. Lacefield, Jordi Bonaventura, Michael Michaelides, C. Savio Chan, Ofer Yizhar & Christoph Kellendonk

Controlling light propagation in multimode fibers for imaging, spectroscopy, and beyond

Hui Cao, Tomáš Čižmár, Sergey Turtaev, Tomáš Tyc, and Stefan Rotter

The protein matrix of plastocyanin supports long-distance charge transport with photosystem I and the copper ion regulates its spatial span and conductance

Manuel López-Ortiz, Ricardo A. Zamora, Marina I. Giannotti, Pau Gorostiza

Systems neuroscience: A box full of tools to illuminate the black box of the brain

J. Simon Wiegert, Marc Spehr, Ileana L. Hanganu-Opatz

Reorganization of adolescent prefrontal cortex circuitry is required for mouse cognitive maturation

Jastyn A. Pöpplau, Timo Schwarze, Mariia Dorofeikova, Irina Pochinok, Anne Günther, Annette Marquardt, Ileana L. Hanganu-Opatz

Extreme distributions in the preconfigured developing brain

Mattia Chini, Marilena Hnida, Johanna K. Kostka, Yu-Nan Chen, Ileana L. Hanganu-Opatz

Olfactory bulb activity shapes the development of entorhinal-hippocampal coupling and associated cognitive abilities

Yu-Nan Chen, Johanna K. Kostka, Sebastian H. Bitzenhofer, Ileana L. Hanganu-Opatz

Fiber photometry-based investigation of brain function and dysfunction

Nicole Byron, Shuzo Sakata

SaLSa: A Combinatory Approach of Semi-Automatic Labeling and Long Short-Term Memory to Classify Behavioral Syllables

Shuzo Sakata

Lights, fiber, action! A primer on in vivo fiber photometry

Eleanor H. Simpson, Thomas Akam, Tommaso Patriarchi, Marta Blanco-Pozo, Lauren M. Burgeno, Ali Mohebi, Stephanie J. Cragg, Mark E. Walton

Three-Photon Infrared Stimulation of Endogenous Neuroreceptors in Vivo

Rosalba Sortino, Marina Cunquero, Gustavo Castro-Olvera, Ricard Gelabert, Miquel Moreno, Fabio Riefolo, Carlo Matera, Noèlia Fernàndez-Castillo, Luca Agnetta, Michael Decker, José M. Lluch, Jordi Hernando, Pablo Loza-Alvarez, Pau Gorostiza

Pontine Waves Accompanied by Short Hippocampal Sharp Wave-Ripples During Non-rapid Eye Movement Sleep

Tomomi Tsunematsu, Sumire Matsumoto, Mirna Merkler, Shuzo Sakata

Sensitive multicolor indicators for monitoring norepinephrine in vivo

Zacharoula Kagiampaki, Valentin Rohner, Cedric Kiss, Sebastiano Curreli, Alexander Dieter, Maria Wilhelm, Masaya Harada, Sian N. Duss, Jan Dernic, Musadiq A. Bhat, Xuehan Zhou, Luca Ravotto, Tim Ziebarth, Laura Moreno Wasielewski, Latife Sönmez, Dietmar Benke, Bruno Weber, Johannes Bohacek, Andreas Reiner, J. Simon Wiegert, Tommaso Fellin, Tommaso Patriarchi

Developmental overproduction of cortical superficial neurons impairs adult auditory cortical processing

Mirna Merkler, Nancy Y Ip, Shuzo Sakata

Optogenetics for light control of biological systems

Valentina Emiliani, Emilia Entcheva, Rainer Hedrich, Peter Hegemann, Kai R. Konrad, Christian Lüscher, Mathias Mahn, Zhuo-Hua Pan, Ruth R. Sims, Johannes Vierock & Ofer Yizhar

Light- and Redox-Dependent Force Spectroscopy Reveals that the Interaction between Plastocyanin and Plant Photosystem I Is Favored when One Partner Is Ready for Electron Transfer

Ricardo A. Zamora, Manuel López-Ortiz, Montserrat Sales-Mateo, Chen Hu, Roberta Croce, Rinu Abraham Maniyara, Valerio Pruneri, Marina I. Giannotti*, and Pau Gorostiza

Phosphorylation disrupts long-distance electron transport in cytochrome c

Alexandre M. J. Gomila, Gonzalo Pérez-Mejías, Alba Nin-Hill, Alejandra Guerra-Castellano, Laura Casas-Ferrer, Sthefany Ortiz-Tescari, Antonio Díaz-Quintana, Josep Samitier, Carme Rovira, Miguel A. De la Rosa, Irene Díaz-Moreno, Pau Gorostiza, Marina I. Giannotti & Anna Lagunas

A bistable inhibitory OptoGPCR for multiplexed optogenetic control of neural circuits

Jonas Wietek, Adrianna Nozownik, Mauro Pulin, Inbar Saraf-Sinik, Noa Matosevich, Daniela Malan, Bobbie J. Brown, Julien Dine, Rivka Levy, Anna Litvin, Noa Regev, Suraj Subramaniam, Eyal Bitton, Asaf Benjamin, Bryan A. Copits, Philipp Sasse, Benjamin R. Rost, Dietmar Schmitz, Peter Soba, Yuval Nir, J. Simon Wiegert, Ofer Yizhar

A flexible two-photon fiberscope for fast activity imaging and precise optogenetic photostimulation of neurons in freely moving mice

Nicolò Accanto , François G.C. Blot, Antonio Lorca-Cámara, Valeria Zampini, Florence Bui, Christophe Tourain, Noam Badt, Ori Katz, Valentina Emiliani

Effects of early life stress and subsequent re-exposure to stress on neuronal activity in the lateral habenula

Jack F. Webster, Sanne Beerens & Christian Wozny

Determinants of functional synaptic connectivity among amygdala-projecting prefrontal cortical neurons in male mice

Yoav Printz, Pritish Patil, Mathias Mahn, Asaf Benjamin, Anna Litvin, Rivka Levy, Max Bringmann, Ofer Yizhar

Layer-specific impairment in the developing lateral entorhinal cortex of immune-challenged Disc1+/− mice

Rebecca Kringel, Lingzhen Song, Xiaxia Xu, Sebastian H. Bitzenhofer, Ileana L. Hanganu-Opatz

110 μm thin endo-microscope for deep-brain in vivo observations of neuronal connectivity, activity and blood flow dynamics

Miroslav Stibůrek, Petra Ondráčková, Tereza Tučková, Sergey Turtaev, Martin Šiler, Tomáš Pikálek, Petr Jákl, André Gomes, Jana Krejčí, Petra Kolbábková, Hana Uhlířová, Tomáš Čižmár

Recent Advances on High-Speed and Holographic Two-Photon Direct Laser Writing

Antonio Balena, Marco Bianco, Ferruccio Pisanello, Massimo De Vittorio

Toward Plasmonic Neural Probes: SERS Detection of Neurotransmitters through Gold-Nanoislands-Decorated Tapered Optical Fibers with Sub-10 nm Gaps

Di Zheng, Filippo Pisano, Liam Collard, Antonio Balena, Marco Pisanello, Barbara Spagnolo, Rosa Mach-Batlle, Francesco Tantussi, Luigi Carbone, Francesco De Angelis, Manuel Valiente, Liset M. de la Prida, Cristian Ciracì, Massimo De Vittorio, Ferruccio Pisanello

Reversible Photocontrol of Dopaminergic Transmission in Wild-Type Animals

Carlo Matera, Pablo Calvé, Verònica Casadó-Anguera, Rosalba Sortino, Alexandre M. J. Gomila, Estefanía Moreno, Thomas Gener, Cristina Delgado-Sallent, Pau Nebot, Davide Costazza, Sara Conde-Berriozabal, Mercè Masana, Jordi Hernando, Vicent Casadó, M. Victoria Puig, Pau Gorostiza

Optogenetics at the presynapse

Benjamin R. Rost, Jonas Wietek, Ofer Yizhar & Dietmar Schmitz

Donor–Acceptor Stenhouse Adduct Displaying Reversible Photoswitching in Water and Neuronal Activity

Rossella Castagna, Galyna Maleeva, Deborah Pirovano, Carlo Matera, Pau Gorostiza

A flexible two-photon endoscope for fast activity imaging and cell-precise optogenetic photo-stimulation of neurons in freely moving animals.

Nicolò Accanto, François G. C. Blot, Antonio Lorca Camara, Valeria Zampini, Florence Bui, Christophe Tourain, Noam Badt, Ori Katz, Valentina Emiliani

An increase of inhibition drives the developmental decorrelation of neural activity

Mattia Chini, Thomas Pfeffer, Ileana Hanganu-Opatz

Holographic Manipulation of Nanostructured Fiber Optics Enables Spatially-Resolved, Reconfigurable Optical Control of Plasmonic Local Field Enhancement and SERS

Liam Collard, Filippo Pisano, Di Zheng, Antonio Balena, Muhammad Fayyaz Kashif, Marco Pisanello, Antonella D'Orazio, Liset M de la Prida, Cristian Ciracì, Marco Grande, Massimo De Vittorio, Ferruccio Pisanello

A deep-learning approach for online cell identification and trace extraction in functional two-photon calcium imaging

Sità Luca, Brondi Marco, Lagomarsino de Leon Roig Pedro, Curreli Sebastiano, Panniello Mariangela, Vecchia Dania, Fellin Tommaso

Fast Photoswitchable Molecular Prosthetics Control Neuronal Activity in the Cochlea

Garrido-Charles Aida,Huet Antoine, Matera Carlo, Thirumalai Anupriya, Hernando Jordi, Llebaria Amadeu, Moser Tobias, Gorostiza Pau

Stackable wireless controller of single-sided µLED arrays for optogenetics in freely behaving animals.

Klein Eric Ullrich, Claudio Ray, Paul Oliver, Ruther Patrick

Near perfect focusing through multimode fibres

André D. Gomes, Sergey Turtaev, Yang Du, Tomáš Čižmár

Tapered fibertrodes for optoelectrical neural interfacing in small brain volumes with reduced artefacts

Barbara Spagnolo, Antonio Balena, Rui T. Peixoto, Marco Pisanello, Leonardo Sileo, Marco Bianco, Alessandro Rizzo, Filippo Pisano, Antonio Qualtieri, Dario Domenico Lofrumento, Francesco De Nuccio, John A. Assad, Bernardo L. Sabatini, Massimo De Vittorio, Ferruccio Pisanello

Neurophotonic tools for microscopic measurements and manipulation: status report

Ahmed Abdelfattah, Sapna Ahuja, Taner Akkin, Srinivasa Rao Allu, David A. Boas, Joshua Brake, Erin M. Buckley, Robert E. Campbell, Anderson I. Chen, Xiaojun Cheng, Tomáš Cižmár, Irene Costantini, Massimo De Vittorio, Anna Devor, Patrick R. Doran, Mirna El Khatib, Valentina Emiliani, Natalie Fomin-Thunemann, Yeshaiahu Fainman, Tomás Fernández Alfonso, Christopher G. L. Ferri, Ariel Gilad, Xue Han, Andrew Harris, Elizabeth M. C. Hillman, Ute Hochgeschwender, Matthew G. Holt, Na Ji, Kivilcim Kiliç, Evelyn M. R. Lake, Lei Li, Tianqi Li, Philipp Mächler, Rickson C. Mesquita, Evan W. Miller, K.M. Naga Srinivas Nadella, U. Valentin Nägerl, Yusuke Nasu, Axel Nimmerjahn, Petra Ondrácková, Francesco S. Pavone, Citlali Perez Campos, Darcy S. Peterka, Filippo Pisano, Ferruccio Pisanello, Francesca Puppo, Bernardo L. Sabatini, Sanaz Sadegh, Sava Sakadžic, Shy Shoham, Sanaya N. Shroff, R. Angus Silver, Ruth R. Sims, Spencer L. Smith, Vivek J. Srinivasan, Martin Thunemann, Lei Tian, Lin Tian, Thomas Troxler, Antoine Valera, Alipasha Vaziri, Sergei A. Vinogradov, Flavia Vitale, Lihong V. Wang, Hana Uhlířová, Chris Xu, Changhuei Yang, Mu-Han Yang, Gary Yellen, Ofer Yizhar, Yongxin Zhao

An open source three-mirror laser scanning holographic two-photon lithography system

Pisanello, Marco; Zheng, Di; Balena, Antonio; Pisano, Filippo; De Vittorio, Massimo; Pisanello, Ferruccio

Distance and Potential Dependence of Charge Transport Through the Reaction Center of Individual Photosynthetic Complexes

Manuel López-Ortiz, Ricardo A. Zamora, Marina Inés Giannotti, Chen Hu, Roberta Croce, Pau Gorostiza

Optogenetic strategies for high-efficiency all-optical interrogation using blue-light-sensitive opsins

Angelo Forli, Matteo Pisoni, Yoav Printz, Ofer Yizhar, Tommaso Fellin

Inhibition Within the Lateral Habenula—Implications for Affective Disorders

Jack F. Webster, Salvatore Lecca, Christian Wozny

A genetically encoded sensor for in vivo imaging of orexin neuropeptides

Loïc Duffet, Seher Kosar, Mariangela Panniello, Bianca Viberti, Edward Bracey, Anna D. Zych, Arthur Radoux-Mergault, Xuehan Zhou, Jan Dernic, Luca Ravotto, Yuan-Chen Tsai, Marta Figueiredo, Shiva K. Tyagarajan, Bruno Weber, Miriam Stoeber, Nadine Gogolla, Markus H. Schmidt, Antoine R. Adamantidis, Tommaso Fellin, Denis Burdakov, Tommaso Patriarchi

Developmental decrease of entorhinal-hippocampal communication in immune-challenged DISC1 knockdown mice

Xiaxia Xu, Lingzhen Song, Rebecca Kringel, Ileana L. Hanganu-Opatz

Sparser and Less Efficient Hippocampal-Prefrontal Projections account for Developmental Network Dysfunction in a Model of Psychiatric Risk Mediated by Gene-Environment Interaction

Lingzhen Song, Xiaxia Xu, Peggy Putthoff, David Fleck, Marc Spehr, Ileana L. Hanganu-Opatz

Subunit-Specific Photocontrol of Glycine Receptors by Azobenzene-Nitrazepam Photoswitcher

Galyna Maleeva, Alba Nin-Hill, Karin Rustler, Elena Petukhova, Daria Ponomareva, Elvira Mukhametova, Alexandre MJ Gomila, Daniel Wutz, Mercedes Alfonso-Prieto, Burkhard König, Pau Gorostiza, Piotr Bregestovski

Rational Design of Photochromic Analogues of Tricyclic Drugs

Fabio Riefolo, Rosalba Sortino, Carlo Matera, Enrique Claro, Beatrice Preda, Simone Vitiello, Sara Traserra, Marcel Jiménez, Pau Gorostiza

Orthogonalization of far-field detection in tapered optical fibers for depth-selective fiber photometry in brain tissue

Marco Bianco, Marco Pisanello, Antonio Balena , Cinzia Montinaro, Filippo Pisano, Barbara Spagnolo, Bernardo L. Sabatini, Massimo De Vittorio, Ferruccio Pisanello

Wavefront engineering for controlled structuring of far-field intensity and phase patterns from multimodal optical fibers

Liam Collard, Filippo Pisano, Marco Pisanello, Antonio Balena, Massimo De Vittorio, Ferruccio Pisanello

Single‐layer tri‐state switching as an economical method to address linear light‐emitting diode arrays

Klein Eric, Ruther Patrick, Paul Oliver

Plasmonics on a Neural Implant: Engineering Light–Matter Interactions on the Nonplanar Surface of Tapered Optical Fibers

Filippo Pisano, Muhammad Fayyazq Kashif, Balena Antonio, Pisanello Marco, De Angelis Francesco, de la Prida Liset, Valiente Manuel, D'Orazio Antonella, De Vittorio Massimo, Grande Marco, Pisanello Ferruccio

Computational image enhancement of multimode fibre-based holographic endo-microscopy: harnessing the muddy modes

Tereza Tučková, Martin Šiler, Dirk E. Boonzajer Flaes, Petr Jákl, Sergey Turtaev, Stanislav Krátký, Rainer Heintzmann, Hana Uhlířová, and Tomáš Čižmár

Influence of the anatomical features of different brain regions on the spatial localization of fiber photometry signals

Cinzia Montinaro, Marco Pisanello, Marco Bianco, Barbara Spagnolo, Filippo Pisano, Antonio Balena, Francesco De Nuccio, Dario Domenico Lofrumento, Tiziano Verri, Massimo De Vittorio, and Ferruccio Pisanello

Mutual Interactions between Brain States and Alzheimer’s Disease Pathology: A Focus on Gamma and Slow Oscillations

Nicole Byron, Anna Semenova and Shuzo Sakata

Adrenergic Modulation With Photochromic Ligands

Davia Prischich, Alexandre M. J. Gomila, Santiago Milla-Navarro, Gemma Sangüesa, Rebeca Diez-Alarcia, Beatrice Preda, Carlo Matera, Montserrat Batlle, Laura Ramírez, Ernest Giralt, Jordi Hernando, Eduard Guasch, J. Javier Meana, Pedro de la Villa, Pau Gorostiza

Control of Brain State Transitions with a Photoswitchable Muscarinic Agonist

Almudena Barbero-Castillo, Fabio Riefolo, Carlo Matera, Sara Caldas-Martínez, Pedro Mateos-Aparicio, Julia F. Weinert, Aida Garrido-Charles, Enrique Claro, Maria V. Sanchez-Vives, Pau Gorostiza

Optogenetic strategies for high-efficiency all-optical interrogation using blue-light-sensitive opsins

Angelo Forli, Matteo Pisoni, Yoav Printz, Ofer Yizhar, Tommaso Fellin

A versatile GPCR toolkit to track in vivo neuromodulation: not a one-size-fits-all sensor

Marie A. Labouesse and Tommaso Patriarchi